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Participating Societies

American Bryological and Lichenological Society (ABLS)
American Fern Society (AFS)
American Society of Plant Taxonomists (ASPT)
Botanical Society of America (BSA)
International Association for Plant Taxonomy (IAPT)

Presentations for Program:: Genomics / Proteomics

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SessionDate/TimeLocationTitleTypeAuthorsKeywords

Monday, July 29th

Monday, July 29th, 5:30 pm to 7:00 pm · Grand Salon A - D/Riverside Hilton
Session P: Contributed Posters: Genomics/Proteomics
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PGP001July 29th 5:30 pmGrand Salon A - D/Riverside HiltonRedefining the Pseudoautosomal region boundaries of Carica papaya X chromosome
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Poster: Genomics / ProteomicsLappin, Fiona; Medert, Charles; Mardonovich, Sandra; Wu, Meng; Moore, Richard.
PGP002July 29th 5:30 pmGrand Salon A - D/Riverside HiltonCopy number and expression of chloroplast and nuclear genes belonging to the Photosystem II and Calvin cycle throughout different ploidy levels in Leucanthemum (Compositeae, Anthemideae)
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Poster: Genomics / ProteomicsTalianova, Martina; Griesenbeck, Joachim; Oberprieler, Christoph.Polyploidy
expression
Gene duplications
PGP003July 29th 5:30 pmGrand Salon A - D/Riverside HiltonCharacterizing Biochemical Phenotypes through a Metabolite Analysis Platform: Research Communication Enabled through Public Ontologies and Controlled Vocabularies
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Poster: Genomics / ProteomicsEilers, Robert J..metabolite analysis
Ontology
controlled vocabulary
analytical biochemistry
biochemical phenotypes
PGP004July 29th 5:30 pmGrand Salon A - D/Riverside HiltonSearching for alternative splicing candidate genes using next-generation sequencing in Tragopogon (Asteraceae)
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Poster: Genomics / ProteomicsLiu, Xiaoxian; Soltis, Pamela; Soltis, Douglas; Barbazuk, W. Brad.Polyploidization
Tragopogon
RNA alternative splicing
Next-generation sequencing
PicBio error correction.
PGP005July 29th 5:30 pmGrand Salon A - D/Riverside HiltonComparative genomics of Brassicales plastomes
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Poster: Genomics / ProteomicsTang, Michelle; Edger, Patrick; Pires, Joseph.de novo assembly
Comparative methods
Chloroplast DNA
genome evolution
PGP006July 29th 5:30 pmGrand Salon A - D/Riverside HiltonThe investigation on protein evolution of Y chromosome in Carica papaya
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Poster: Genomics / ProteomicsWu, Meng; Moore, Richard.sex chromosomes
Carica papaya
protein evolution
PGP007July 29th 5:30 pmGrand Salon A - D/Riverside HiltonComparative genomics and lineage specific gene expression in the genus Linum.
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Poster: Genomics / ProteomicsGalindo, Leonardo; McDill, Joshua; Wong, Gane Ka-Shu; Deyholos, Michael.Malpighiales
Illumina
RNA-Seq
genome
transcriptome
PGP008July 29th 5:30 pmGrand Salon A - D/Riverside HiltonDevelopment of pentatricopetide repeat (PPR) markers for Penstemon using data from whole genome shotgun sequencing
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Poster: Genomics / ProteomicsWenzel, Aaron; Blischak, Paul; Wolfe, Andrea.pentatricopeptide repeats
marker development
Penstemon
Plantaginaceae
genome skimming
PGP009July 29th 5:30 pmGrand Salon A - D/Riverside HiltonEvolution of Mitogen Activated Protein Kinase Kinase (MAPKK) Gene Family in Plants
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Poster: Genomics / ProteomicsMacArthur , Kenton ; Murray, Kevin; Neupane, Achal; Benson, Benjamin; Piya, Sarbottam; Nepal, Madhav.MAPK genes
gene family
gene duplication
Evolutionary divergence
paralogous genes

Tuesday, July 30th

Tuesday, July 30th, 10:00 am to 11:15 am · Newberry/Riverside Hilton
Session 24: Contributed Papers: Genomics I:polyploidy
Presiding: Emily Sessa, University of Arizona
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24001July 30th 10:00 amNewberry/Riverside HiltonAbsolute dosage and functional diversification drive majority of gene retention following polyploidy in the Compositae
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Oral PaperSessa, Emily; Barker, Michael.Asteraceae
dosage balance hypothesis
neofunctionalization
subfunctionalization
absolute dosage
paleopolyploidy
functional divergence of gene duplicates
gene ontology (GO)
24002July 30th 10:15 amNewberry/Riverside HiltonTime after time: Comparing homeolog expression patterns between two independent origins of the allotetraploid fern Polypodium hesperium
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Oral PaperSigel, Erin; Der, Joshua; DE PAMPHILIS, CLAUDE W; Pryer, Kathleen.fern
hybrid
next generation sequencing
polyploidy
Phylogenomics
Polypodium
reticulation
RNA-Seq
allopolyploidy
24003July 30th 10:30 amNewberry/Riverside HiltonStructural evolution of mitochondrial genomes in early diverging algal lineages
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Oral PaperAllen, Jessica; Mccourt, Richard; Karol, Kenneth.mitochondrial genome
prasinophyte
Chlorophyta
Algae
Inverted repeat
Phylogenomics
24004July 30th 10:45 amNewberry/Riverside HiltonHow low can you go? Gene predictions and putative annotations in four species of Penstemon (Plantaginaceae) from ultra low coverage 454 sequencing
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Oral PaperBlischak, Paul; Wenzel, Aaron; Stevens, Mikel; Wolfe, Andrea.sequence annotation
marker development
Plantaginaceae
Penstemon
nuclear markers
pentatricopeptide repeats
MAKER annotation pipeline
24005July 30th 11:00 amNewberry/Riverside HiltonGenome-enabled phylogeography in Asclepias cryptoceras (Apocynaceae)
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Oral PaperWeitemier, Kevin; Straub, Shannon; Fishbein, Mark; Cronn, Richard; Liston, Aaron.Asclepias
Apocynaceae
Target Enrichment  
Hybridization sequencing
SNP
Next-generation sequencing
Phylogeography
Population genomics

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