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Genomics / Proteomics

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IDTitleSection/TopicAuthorsKeywords
665Absolute dosage and functional diversification drive majority of gene retention following polyploidy in the Compositae
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Genomics / ProteomicsSessa, Emily; Barker, Michael.Asteraceae
dosage balance hypothesis
neofunctionalization
subfunctionalization
absolute dosage
paleopolyploidy
functional divergence of gene duplicates
gene ontology (GO)
426Characterizing Biochemical Phenotypes through a Metabolite Analysis Platform: Research Communication Enabled through Public Ontologies and Controlled Vocabularies
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Genomics / ProteomicsEilers, Robert J..metabolite analysis
Ontology
controlled vocabulary
analytical biochemistry
biochemical phenotypes
676Comparative genomics and lineage specific gene expression in the genus Linum.
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Genomics / ProteomicsGalindo, Leonardo; McDill, Joshua; Wong, Gane Ka-Shu; Deyholos, Michael.Malpighiales
Illumina
RNA-Seq
genome
transcriptome
511Comparative genomics of Brassicales plastomes
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Genomics / ProteomicsTang, Michelle; Edger, Patrick; Pires, Joseph.de novo assembly
Comparative methods
Chloroplast DNA
genome evolution
366Copy number and expression of chloroplast and nuclear genes belonging to the Photosystem II and Calvin cycle throughout different ploidy levels in Leucanthemum (Compositeae, Anthemideae)
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Genomics / ProteomicsTalianova, Martina; Griesenbeck, Joachim; Oberprieler, Christoph.Polyploidy
expression
Gene duplications
760Development of pentatricopetide repeat (PPR) markers for Penstemon using data from whole genome shotgun sequencing
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Genomics / ProteomicsWenzel, Aaron; Blischak, Paul; Wolfe, Andrea.pentatricopeptide repeats
marker development
Penstemon
Plantaginaceae
genome skimming
962Evolution of Mitogen Activated Protein Kinase Kinase (MAPKK) Gene Family in Plants
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Genomics / ProteomicsMacArthur , Kenton ; Murray, Kevin; Neupane, Achal; Benson, Benjamin; Piya, Sarbottam; Nepal, Madhav.MAPK genes
gene family
gene duplication
Evolutionary divergence
paralogous genes
775Genome-enabled phylogeography in Asclepias cryptoceras (Apocynaceae)
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Genomics / ProteomicsWeitemier, Kevin; Straub, Shannon; Fishbein, Mark; Cronn, Richard; Liston, Aaron.Asclepias
Apocynaceae
Target Enrichment
Hybridization sequencing
SNP
Next-generation sequencing
Phylogeography
Population genomics
369How low can you go? Gene predictions and putative annotations in four species of Penstemon (Plantaginaceae) from ultra low coverage 454 sequencing
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Genomics / ProteomicsBlischak, Paul; Wenzel, Aaron; Stevens, Mikel; Wolfe, Andrea.sequence annotation
marker development
Plantaginaceae
Penstemon
nuclear markers
pentatricopeptide repeats
MAKER annotation pipeline
298Redefining the Pseudoautosomal region boundaries of Carica papaya X chromosome
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Genomics / ProteomicsLappin, Fiona; Medert, Charles; Mardonovich, Sandra; Wu, Meng; Moore, Richard.
434Searching for alternative splicing candidate genes using next-generation sequencing in Tragopogon (Asteraceae)
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Genomics / ProteomicsLiu, Xiaoxian; Soltis, Pamela; Soltis, Douglas; Barbazuk, W. Brad.Polyploidization
Tragopogon
RNA alternative splicing
Next-generation sequencing
PicBio error correction.
708Structural evolution of mitochondrial genomes in early diverging algal lineages
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Genomics / ProteomicsAllen, Jessica; Mccourt, Richard; Karol, Kenneth.mitochondrial genome
prasinophyte
Chlorophyta
Algae
Inverted repeat
Phylogenomics
581The investigation on protein evolution of Y chromosome in Carica papaya
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Genomics / ProteomicsWu, Meng; Moore, Richard.sex chromosomes
Carica papaya
protein evolution
651Time after time: Comparing homeolog expression patterns between two independent origins of the allotetraploid fern Polypodium hesperium
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Genomics / ProteomicsSigel, Erin; Der, Joshua; DE PAMPHILIS, CLAUDE W; Pryer, Kathleen.fern
hybrid
next generation sequencing
polyploidy
Phylogenomics
Polypodium
reticulation
RNA-Seq
allopolyploidy

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