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Phylogenomics

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IDTitleSection/TopicAuthorsKeywords
539Anchored Phylogenomics in the Angiosperms
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PhylogenomicsMast, Austin; Buddenhagen, Christopher; Lemmon, Alan R..Angiosperms
Anchored Enrichment
Anchored Phylogenomics
Cyperaceae
Monocots
Phylogenomics
phylogeny
Rhynchospora
Sequence Capture
Target Enrichment
464Anthocyanin regulating MYB transcription factor evolution in four Solanaceous species
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PhylogenomicsGates, Daniel; Smith, Stacey.Floral Color
genome evolution
gene duplication
functional divergence of gene duplicates
Phylogenomics
216A Phylogenetic Analysis of the Andean Genus Polylepis (Rosaceae) using Next-Generation Sequencing
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PhylogenomicsSegovia, Claudia; Liston, Aaron; Gitzendanner, Matthew; Soltis, Douglas; Soltis, Pamela.Phylogenomics
Andes
Polylepis
Rosaceae
NGS
784Diversity and Evolutionary Divergence of Resistant Genes (R Genes) in Legumes
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PhylogenomicsBenson, Benjamin; Nepal, Madhav.CNL
NBS-LRR
legumes
functional divergence of gene duplicates
Diversity
617Estimating relationships among Sabal species through analysis of gene capture data
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PhylogenomicsHeyduk, Karolina; Trapnell, Dorset; Leebens-Mack, Jim.Phylogenomics
Arecaceae
Deep coalescence
805Fishing for defense genes in the milkweed gene pool
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PhylogenomicsFishbein, Mark; Fathepure, Shakuntala; Holland, LaRinda; Cronn, Richard; Straub, Shannon; Liston, Aaron.Phylogenomics
plant defense
trichome
Transcription Factor
Molecular Evolution
Asclepias
Apocynaceae
838From Pectinate to Divaricate: Phylogenetic Systematics of Oreocarya (Boraginaceae) Using Shallow Genome Skimming
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PhylogenomicsRipma, Lee; Simpson, Michael.Phylogenetics
Oreocarya
Boraginaceae
next generation sequencing
325Got Genome? A long PCR based method for chloroplast genome enrichment and phylogenomics in angiosperms
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PhylogenomicsUribe-Convers, Simon; Duke, Justin R; Moore, Michael; Tank, David.Angiosperms
chloroplast enrichment
chloroplast genome
long PCR
next generation sequencing
729Molecular evolution, gene informativeness and phylogenetic reconstruction
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PhylogenomicsHilu, Khidir; Black, Chelsea; Oza, Dipan.Phylogenetics
Gene Evolution
Phylogenetic signal
rosids
758Phylogenomic analysis of Nyctaginaceae based on targeted enrichment of over 200 low-copy nuclear loci
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PhylogenomicsDouglas, Norman; Leatherman, Lila; Mostow, Rebecca; Moore, Michael.Phylogenomics
Target Enrichment
Sequence Capture
Nyctaginaceae
876Phylogenomic reconstructions in Rhododendron subgenus Hymenanthes
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PhylogenomicsStitzer, Michelle; Lindsley, Dale; Hall, Benjamin.Rhododendron
next generation sequencing
RAD-seq
Phylogenomics
923Phylogenomics of Fothergilla by GBS – comparing data yields of experimental repeats and software and evaluating phylogenetic outcomes of taxon sampling and data type
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PhylogenomicsQi, Zhechen; Yu, Yi; Whetten, Ross; Ranney, Thomas; Miller, Ron; Lewandowski, Rick; Xiang, Qiuyun (Jenny).Fothergilla
Phylogenomics
polyploids
next generation sequencing
GBS
682Phylogenomics of Lachemilla (Rosaceae): Coalescent-based Species Trees using Sequence Capture Data
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PhylogenomicsMorales-Briones, Diego; Liston, Aaron; Tank, David.Phylogenomics
Sequence Capture
Coalescence
species trees
Lachemilla
Rosaceae
685RNA-Seq phylogenomic pipeline for non-model plants
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PhylogenomicsHearn, David; Hannon, Dylan; Poulsen, Travis; Cronn, Richard; Liston, Aaron.Adenia
RNA-Seq
Phylogenomics
Non-model species
next generation sequencing
372Scrutinizing homoploid hybrid speciation in the genus Leucanthemum (Compositae, Anthemideae) using species tree reconstruction methods
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PhylogenomicsKonowalik, Kamil; Wagner, Florian; Tomasello, Salvatore; Greiner, Roland; Vogt, Robert; Oberprieler, Christoph.Polyploidy
Phylogenetics
speciation
gene trees
species tree
763Using Next-Gen sequencing to improve phylogenetic resolution in a rapid radiation of species, Anthurium (Araceae), preliminary data
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PhylogenomicsCarlsen, Monica; McKain, Michael; Kellogg, Elizabeth.Anthurium
Araceae
rapid radiation
Phylogenomics
chloroplast genome
630Whole Plastome Phylogeny of Andropogoneae (Poaceae)
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PhylogenomicsMcKain, Michael; Vela Diaz, Dilys; Zhong, Jinshun; Carlsen, Monica; Kellogg, Elizabeth.Andropogoneae
Poaceae
plastid
Phylogenomics

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